Sherwood Lab UPA/LSU Database v. 0.01.1
Sherwood Lab UPA/LSU Database v. 0.01.1
Date
2016
Authors
Johnston, Emily
Sherwood, Alison
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Abstract
This database was created for taxonomy assignment of UPA and LSU amplicon sequences generated in metabarcoding studies. It is specifically intended for phycological and plant biology/botany research and the taxonomy reflects that (see the ReadMe.txt file for more details). However, researchers in other fields are invited to use it and modify it for their needs. It contains three files: a Read Me file with more details about the creation and using the database; a reference sequence file with 97,194 sequences; and a taxonomy file.
Description
Keywords
amplicon,
metabarcoding,
sequence database,
UPA,
Universal Plastid Amplicon,
LSU,
Large Subunit,
23S,
28S,
rDNA,
ribosomal DNA,
phycology,
plant biology,
botany,
microbial ecology
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1 database
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