Please use this identifier to cite or link to this item: http://hdl.handle.net/10125/42782

Sherwood Lab UPA/LSU Database v. 0.01.1

File Description Size Format  
ReadMe.txt ReadMe File 3.9 kB Text View/Open
SherwoodLab UPA LSU Ref Seqs v0.01.1.fasta Dataset in fasta file format 277.51 MB Unknown View/Open
SherwoodLab UPA LSU Tax v0.01.1.txt 14.34 MB Text View/Open

Item Summary

Title:Sherwood Lab UPA/LSU Database v. 0.01.1
Authors:Johnston, Emily
Sherwood, Alison
Keywords:amplicon
metabarcoding
sequence database
UPA
Universal Plastid Amplicon
show 10 moreLSU
Large Subunit
23S
28S
rDNA
ribosomal DNA
phycology
plant biology
botany
microbial ecology
show less
Date Issued:2016
Abstract:This database was created for taxonomy assignment of UPA and LSU amplicon sequences generated in metabarcoding studies. It is specifically intended for phycological and plant biology/botany research and the taxonomy reflects that (see the ReadMe.txt file for more details). However, researchers in other fields are invited to use it and modify it for their needs. It contains three files: a Read Me file with more details about the creation and using the database; a reference sequence file with 97,194 sequences; and a taxonomy file.
Pages/Duration:1 database
URI:http://hdl.handle.net/10125/42782
Appears in Collections: Emily Johnston


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