Please use this identifier to cite or link to this item: http://hdl.handle.net/10125/42782

Sherwood Lab UPA/LSU Database v. 0.01.1

File Description SizeFormat 
ReadMe.txtReadMe File3.9 kBTextView/Open
SherwoodLab_UPA_LSU_Ref_Seqs_v0.01.1.fastaDataset in fasta file format277.51 MBUnknownView/Open
SherwoodLab_UPA_LSU_Tax_v0.01.1.txt14.34 MBTextView/Open

Item Summary

Title: Sherwood Lab UPA/LSU Database v. 0.01.1
Authors: Johnston, Emily
Sherwood, Alison
Keywords: amplicon
metabarcoding
sequence database
UPA
Universal Plastid Amplicon
show 10 moreLSU
Large Subunit
23S
28S
rDNA
ribosomal DNA
phycology
plant biology
botany
microbial ecology

show less
Issue Date: 2016
Abstract: This database was created for taxonomy assignment of UPA and LSU amplicon sequences generated in metabarcoding studies. It is specifically intended for phycological and plant biology/botany research and the taxonomy reflects that (see the ReadMe.txt file for more details). However, researchers in other fields are invited to use it and modify it for their needs. It contains three files: a Read Me file with more details about the creation and using the database; a reference sequence file with 97,194 sequences; and a taxonomy file.
Pages/Duration: 1 database
URI/DOI: http://hdl.handle.net/10125/42782
Appears in Collections:Emily Johnston



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